(
  (
  (
  (
  s_aureus_n315,
  b_subtilis)Bacillales,
  (
  s_pyogenes_sf370,
  s_pneumoniae_tigr4)Streptococcus)Bacilli,
  (
  (
  e_coli_k12,
  b_aphidicola_tokyo_1998)Enterobacteriaceae,
  w_pipientis_wmel,
  n_meningitidis_a)Proteobacteria,
  m_tuberculosis_h37rv,
  b_burgdorferi_dsm_4680)Bacteria,
  (
  (
  (
  (
  (
  (
  (
  (
  (
  (
  (
  (
  anolis_carolinensis,
  gallus_gallus)Sauria,
  (
  (
  (
  (
  (
  pan_troglodytes,
  homo_sapiens)Homininae,
  pongo_abelii)Hominidae,
  mus_musculus)Euarchontoglires,
  monodelphis_domestica)Theria,
  ornithorhynchus_anatinus)Mammalia)Amniota,
  xenopus_tropicalis)Tetrapoda,
  (
  gasterosteus_aculeatus,
  danio_rerio)Clupeocephala)Euteleostomi,
  ciona_savignyi)Chordata,
strongylocentrotus_purpuratus)Deuterostomia,
  (
  (
  (
  drosophila_melanogaster,
  anopheles_gambiae)Diptera,
  apis_mellifera)Endopterygota,
  daphnia_pulex)Pancrustacea)Coelomata,
  schistosoma_mansoni,
  caenorhabditis_elegans)Bilateria,
  nematostella_vectensis)Eumetazoa,
  trichoplax_adhaerens)Metazoa,
  (
  (
  ustilago_maydis,
  puccinia_graministritici)Basidiomycota,
  (
  (
  (
  neurospora_crassa,
  aspergillus_nidulans)leotiomyceta,
  saccharomyces_cerevisiae)saccharomyceta,
  schizosaccharomyces_pombe)Ascomycota)Dikarya)Fungi/Metazoa group,
  (
  phaeodactylum_tricornutum,
  phytophthora_infestans)stramenopiles,
  (
  (
  (
  arabidopsis_thaliana,
  vitis_vinifera)rosids,
  oryza_sativa)Magnoliophyta,
  physcomitrella_patens)Embryophyta,
  plasmodium_falciparum,
  dictyostelium_discoideum,
  leishmania_major)Eukaryota,
  p_horikoshii)cellular organisms;