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Documentation for Alignments to BGI assembly of Indica Rice sequence

Alignments Summary

Detailed Documentation:

• Rice Coding

  • Rice_ESTcluster_TIGR
  • RiceIndica_ESTcluster_BGI
  • RiceIndica_EST_BGI
  • Rice_EST
  • Rice_CDS
  • Rice_ESTcluster_PlantGDB
  • Rice_cDNA_KOME
    
    

• Rice Non-Coding

  • Rice_MarkerRFLP
  • nonRice_MarkerRFLP
  • Rice_FSTtos17
  • Rice_FSTtransposon
  • Rice_FST-TDNA
  • Rice_ArrayConsensus_Affy57K
  • RiceJaponica_BACend_OMAP
  • RiceBrachyantha_BACend_OMAP
  • RiceRufipogon_BACend_OMAP
  • RiceNivara_BACend_OMAP
  • RiceAlta_BACend_OMAP
  • RiceAustraliensis_BACend_OMAP
  • RiceGlaberrima_BACend_OMAP
  • RicePunctata_BACend_OMAP
  • RiceMinuta_BACend_OMAP
  • RiceCoarctata_BACend_OMAP
  • RiceOfficinalis_BACend_OMAP
  • RiceGranulata_BACend_OMAP
  • Rice_BAC

• Non-Rice

  • Maize

    • Maize_ESTcluster_TIGR
    • Maize_ESTcluster_MMPcornsensus
    • Maize_EST
    • Maize_MethylFilter_Orion
    • Maize_MethylFilter_CSHL
    • Maize_Marker
    • Maize_FSTMu
    • Maize_HiCot_Bennetzen
    • Maize_HiCotCluster_TIGR
    • Maize_HiCotMethylFilterCluster_TIGR
    • Maize_BACend
    • Maize_ESTcluster_PlantGDB
    • Maize_Seq_Panzea
    • Maize_ArrayConsensus_Affy18K
    • Maize_MAGI_ISU
    • Maize_ArrayGene_NSF58K

  • Barley

    • Barley_ESTcluster_TIGR
    • Barley_EST
    • Barley_ArrayExemplar_Affy22K
    • Barley_ESTcluster_PlantGDB

  • Wheat

    • Wheat_ESTcluster_TIGR
    • Wheat_EST
    • Wheat_Marker
    • Wheat_ESTcluster_PlantGDB
    • Wheat_ArrayConsensus_Affy61K

  • Sorghum

    • Sorghum_ESTcluster_TIGR
    • Sorghum_ESTcluster3_Pratt
    • Sorghum_EST
    • Sorghum_ESTcluster_PlantGDB
    • Sorghum_GSS_Klein
    • Sorghum_MethylFilter_Orion
    • Sorghum_Marker
    • Sorghum_cDNA

  • Sugarcane

    • Sugarcane_EST

  • Millet

    • Millet_EST

  • Ryegrass

    • Ryegrass_MethylFilterCluster_Orion
    • Ryegrass_MethylFilter_Orion

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