For source code for a stand-alone version please click here.
For citation, please use this reference Temnykh et al. (2001).
Note: Netscape 2.0 or greater, or IE 4.0 or greater required.
a) Select the maximum motif-length group you wish to find. For example, if you want to search for all SSRs up to and including pentamers (meaning, you'd like to search for dimers, trimers, tetramers, and pentamers), you should select 'pentamer' from the drop-down menu.
dimer trimer tetramer pentamer hexamer heptamer octamer nonamer decamer
b) Enter the minimum number of repeats you will allow. Entering a '5,' for example, will match SSRs with five or more motif repeats, such as ag-5 ('agagagagag').
FOR EXAMPLE,
>seq1agagattaggatcgatcgcgctctctctctctctctcgatcgagatcgatggccatcatcatcatcatcattgagatatagcgcgatatcgagagatctcagaatagatatcgcgctatagagagatcgagagagagtaga>seq2agagataggaatatgagatagcgggggggggggggcgctatacgcgctcggagagagatctctctctctcttatagagatcgatcgactagctagatataagactcactcactcactcactcactcagcgcgat
Paste/Enter your sequence(s) here: