![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "CQX8" (culm length)
| QTL Accession ID | CQX8 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | CULMLG |
| Trait Name | culm length |
| Published Symbol | qCL-3 |
| Trait Synonym(s) |
CL cml |
| Trait Category | Anatomy |
| Chromosome | 3 |
| Comments | Population used was BC1F3 Koshihikari x Kasalath. Trait assayed for length of the culm at maturity. Sampled on single randomly chosen plant. Additive effect due to Koshihikari allele. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 32,353,770-35,443,016 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | NIAS Kosh/Kas BIL QTL 2003 | BNL6.32 | 3 | 123.7-131.8 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQX8 | 3 | 123.7 | 131.8 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R3226 | RFLP | Oryza sativa | qtl_marker |
| To | R1925 | RFLP | Oryza sativa | qtl_marker |
| To | R2856 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000576) | Yamamoto-T et al., 2001 (IAGP) |
| Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yamamoto-T et al., 2001 (SM) |
Database Cross-References (1)
SNPs (16,355)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 32,353,770 | 35,443,016 | ~160K SNPs x 20 accessions (McNally 2... | 1,974 | Search for SNPs |
| chr3 | 32,353,770 | 35,443,016 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
| chr3 | 32,353,770 | 35,443,016 | Huang X, et al, Nat Genetics 2010 Nov... | 7,017 | Search for SNPs |
| chr3 | 32,353,770 | 35,443,016 | RiceDiversity 44K SNP assay, 34 trait... | 7,017 | Search for SNPs |
| chr3 | 32,353,770 | 35,443,016 | RiceDiversity 44K SNP assay, 34 trait... | 338 | Search for SNPs |
