Oryza sativa QTL "CQN37" (leaf senescence)

QTL Accession ID

CQN37

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Trait Symbol

LFSNS

Trait Name

leaf senescence

Published Symbol

Trait Synonym(s)

foliar senescence	sen
stay green

Trait Category

Development

Chromosome

Comments

The trait was assayed for the rate of half-discoloration (RHD). It was determined by chlorophyll content of the flag leaves at the 5 cm tip region, and was measured every 7day for 5 weeks from flowering to maturity. Single marker regressions were used to detect the association between markers and each trait using qGENE software. Significant differences (P<0.05) in marker class means were interpreted as likely linkage of each trait to the marker locus.

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 8

3,173,452-28,248,441 bp

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Details

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Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

JRGP Nip/Kas F2 QTL 2000

BNL6.32

26.3-120.4 cM

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Details

CMap Preview

QTL DB Map Position (1)

Name	Chromosome	Start	Stop
CQN37	8	26.3	120.4

Associated Markers (166)

Direction	Name	Type	Species	Assoc. Type
To	28-ICG	RFLP	Oryza sativa	qtl_marker
To	333A-ICG	RFLP	Oryza sativa	qtl_marker
To	333E-ICG	RFLP	Oryza sativa	qtl_marker
To	885-ICG	RFLP	Oryza sativa	qtl_marker
To	ABC308	RFLP	Hordeum vulgare	qtl_marker
To	C10122S	RFLP	Oryza sativa	qtl_marker
To	C10983S	RFLP	Oryza sativa	qtl_marker
To	C1107	RFLP	Oryza sativa	qtl_marker
To	C1115	RFLP	Oryza sativa	qtl_marker
To	C1121	RFLP	Oryza sativa	qtl_marker
To	C1251S	RFLP	Oryza sativa	qtl_marker
To	C1356	RFLP	Oryza sativa	qtl_marker
To	C1374	RFLP	Oryza sativa	qtl_marker
To	C153	RFLP	Oryza sativa	qtl_marker
To	C166	RFLP	Oryza sativa	qtl_marker
To	C20079S	RFLP	Oryza sativa	qtl_marker
To	C222	RFLP	Oryza sativa	qtl_marker
To	C347	RFLP	Oryza sativa	qtl_marker
To	C392S	RFLP	Oryza sativa	qtl_marker
To	C411	RFLP	Oryza sativa	qtl_marker
To	C483	RFLP	Oryza sativa	qtl_marker
To	C502	RFLP	Oryza sativa	qtl_marker
To	C50580S	RFLP	Oryza sativa	qtl_marker
To	C50778S	RFLP	Oryza sativa	qtl_marker
To	C60293S	RFLP	Oryza sativa	qtl_marker
To	C623	RFLP	Oryza sativa	qtl_marker
To	C83	RFLP	Oryza sativa	qtl_marker
To	C929	RFLP	Oryza sativa	qtl_marker
To	CDO99	RFLP	Avena sativa	qtl_marker
To	R1976S	RFLP	Oryza sativa	qtl_marker
To	R2723	RFLP	Oryza sativa	qtl_marker
To	V187	RFLP	Oryza sativa	qtl_marker
To	S11387	RFLP	Oryza sativa	qtl_marker
To	S13883	RFLP	Oryza sativa	qtl_marker
To	S2387S	RFLP	Oryza sativa	qtl_marker
To	E60549S	RFLP	Oryza sativa	qtl_marker
To	S21656S	RFLP	Oryza sativa	qtl_marker
To	E60560S	RFLP	Oryza sativa	qtl_marker
To	R2976	RFLP	Oryza sativa	qtl_marker
To	E1133S	RFLP	Oryza sativa	qtl_marker
To	R902	RFLP	Oryza sativa	qtl_marker
To	S2108	RFLP	Oryza sativa	qtl_marker
To	S1850	RFLP	Oryza sativa	qtl_marker
To	S1461	RFLP	Oryza sativa	qtl_marker
To	S1633	RFLP	Oryza sativa	qtl_marker
To	S2092	RFLP	Oryza sativa	qtl_marker
To	E10532	RFLP	Oryza sativa	qtl_marker
To	V149	RFLP	Oryza sativa	qtl_marker
To	R2736	RFLP	Oryza sativa	qtl_marker
To	R544	RFLP	Oryza sativa	qtl_marker
To	V192	RFLP	Oryza sativa	qtl_marker
To	S12665S	RFLP	Oryza sativa	qtl_marker
To	PSR154	RFLP	Triticum aestivum	qtl_marker
To	S10038	RFLP	Oryza sativa	qtl_marker
To	E20920S	RFLP	Oryza sativa	qtl_marker
To	E4472S	RFLP	Oryza sativa	qtl_marker
To	G1010	RFLP	Oryza sativa	qtl_marker
To	R1813	RFLP	Oryza sativa	qtl_marker
To	V97	RFLP	Oryza sativa	qtl_marker
To	r45	RFLP	Oryza sativa	qtl_marker
To	S11127	RFLP	Oryza sativa	qtl_marker
To	E61266S	RFLP	Oryza sativa	qtl_marker
To	Mha1.3	RFLP	Sorghum bicolor	qtl_marker
To	S779	RFLP	Oryza sativa	qtl_marker
To	S10588	RFLP	Oryza sativa	qtl_marker
To	R80	RFLP	Oryza sativa	qtl_marker
To	S10715S	RFLP	Oryza sativa	qtl_marker
To	G104	RFLP	Oryza sativa	qtl_marker
To	Y5685R	RFLP	Oryza sativa	qtl_marker
To	M308	RFLP	Zea mays subsp. mays	qtl_marker
To	V208	RFLP	Oryza sativa	qtl_marker
To	E3835S	RFLP	Oryza sativa	qtl_marker
To	E31119S	RFLP	Oryza sativa	qtl_marker
To	E40306S	RFLP	Oryza sativa	qtl_marker
To	R2201	RFLP	Oryza sativa	qtl_marker
To	E31128S	RFLP	Oryza sativa	qtl_marker
To	RZ323	RFLP	Oryza sativa	qtl_marker
To	R2466	RFLP	Oryza sativa	qtl_marker
To	V159	RFLP	Oryza sativa	qtl_marker
To	RZ617	RFLP	Oryza sativa	qtl_marker
To	E20691S	RFLP	Oryza sativa	qtl_marker
To	S21882S	RFLP	Oryza sativa	qtl_marker
To	R2381	RFLP	Oryza sativa	qtl_marker
To	C12318	RFLP	Oryza sativa	qtl_marker
To	Y5175R	RFLP	Oryza sativa	qtl_marker
To	S10543	RFLP	Oryza sativa	qtl_marker
To	RZ698	RFLP	Oryza sativa	qtl_marker
To	L457	RFLP	Oryza sativa	qtl_marker
To	S20045	RFLP	Oryza sativa	qtl_marker
To	S10658	RFLP	Oryza sativa	qtl_marker
To	S21441S	RFLP	Oryza sativa	qtl_marker
To	S15506S	RFLP	Oryza sativa	qtl_marker
To	S20138S	RFLP	Oryza sativa	qtl_marker
To	E2623S	RFLP	Oryza sativa	qtl_marker
To	E61839S	RFLP	Oryza sativa	qtl_marker
To	S14109	RFLP	Oryza sativa	qtl_marker
To	S3680	RFLP	Oryza sativa	qtl_marker
To	R1394	RFLP	Oryza sativa	qtl_marker
To	G2132	RFLP	Oryza sativa	qtl_marker
To	L411	RFLP	Oryza sativa	qtl_marker
To	S13495	RFLP	Oryza sativa	qtl_marker
To	R727	RFLP	Oryza sativa	qtl_marker
To	S10324	RFLP	Oryza sativa	qtl_marker
To	L363	RFLP	Oryza sativa	qtl_marker
To	E60766S	RFLP	Oryza sativa	qtl_marker
To	S2014	RFLP	Oryza sativa	qtl_marker
To	E3802	RFLP	Oryza sativa	qtl_marker
To	L128	RFLP	Oryza sativa	qtl_marker
To	S815	RFLP	Oryza sativa	qtl_marker
To	G1073	RFLP	Oryza sativa	qtl_marker
To	PSR1871	RFLP	Triticum aestivum	qtl_marker
To	E50105S	RFLP	Oryza sativa	qtl_marker
To	S20234S	RFLP	Oryza sativa	qtl_marker
To	E30441S	RFLP	Oryza sativa	qtl_marker
To	PSR128	RFLP	Triticum aestivum	qtl_marker
To	S10631	RFLP	Oryza sativa	qtl_marker
To	E30175S	RFLP	Oryza sativa	qtl_marker
To	S10622	RFLP	Oryza sativa	qtl_marker
To	S15156	RFLP	Oryza sativa	qtl_marker
To	S1609	RFLP	Oryza sativa	qtl_marker
To	S11114	RFLP	Oryza sativa	qtl_marker
To	E60162S	RFLP	Oryza sativa	qtl_marker
To	S2524	RFLP	Oryza sativa	qtl_marker
To	E61231	RFLP	Oryza sativa	qtl_marker
To	L677	RFLP	Oryza sativa	qtl_marker
To	E2448S	RFLP	Oryza sativa	qtl_marker
To	S11102	RFLP	Oryza sativa	qtl_marker
To	G187	RFLP	Oryza sativa	qtl_marker
To	umc201	RFLP	Zea mays subsp. mays	qtl_marker
To	R2676	RFLP	Oryza sativa	qtl_marker
To	umc223	RFLP	Zea mays subsp. mays	qtl_marker
To	PSR2	RFLP	Triticum aestivum	qtl_marker
To	S4036S	RFLP	Oryza sativa	qtl_marker
To	R2382	RFLP	Oryza sativa	qtl_marker
To	L133	RFLP	Oryza sativa	qtl_marker
To	R1985	RFLP	Oryza sativa	qtl_marker
To	R202	RFLP	Oryza sativa	qtl_marker
To	G8002	RFLP	Oryza sativa	qtl_marker
To	G8001	RFLP	Oryza sativa	qtl_marker
To	S6487S	RFLP	Oryza sativa	qtl_marker
To	S14074	RFLP	Oryza sativa	qtl_marker
To	S5064S	RFLP	Oryza sativa	qtl_marker
To	S10655	RFLP	Oryza sativa	qtl_marker
To	V230	RFLP	Oryza sativa	qtl_marker
To	R2118	RFLP	Oryza sativa	qtl_marker
To	V185	RFLP	Oryza sativa	qtl_marker
To	RZ28	RFLP	Oryza sativa	qtl_marker
To	G56	RFLP	Oryza sativa	qtl_marker
To	G1149	RFLP	Oryza sativa	qtl_marker
To	S14003	RFLP	Oryza sativa	qtl_marker
To	PSR152	RFLP	Triticum aestivum	qtl_marker
To	R3961S	RFLP	Oryza sativa	qtl_marker
To	R2027	RFLP	Oryza sativa	qtl_marker
To	R2662	RFLP	Oryza sativa	qtl_marker
To	S2314	RFLP	Oryza sativa	qtl_marker
To	RG136	RFLP	Oryza sativa	qtl_marker
To	C12955	RFLP	Oryza sativa	qtl_marker
To	R1880	RFLP	Oryza sativa	qtl_marker
To	S1570	RFLP	Oryza sativa	qtl_marker
To	R662	RFLP	Oryza sativa	qtl_marker
To	S1088	RFLP	Oryza sativa	qtl_marker
To	R10036S	RFLP	Oryza sativa	qtl_marker
To	E2209S	RFLP	Oryza sativa	qtl_marker
To	R1963	RFLP	Oryza sativa	qtl_marker
To	R404	RFLP	Oryza sativa	qtl_marker
To	G8025	RFLP	Oryza sativa	qtl_marker

Associated Genes (0)

Associated Ontologies (10)

Term Type	Term	Evidence
Trait Ontology	(TO:0000249)	Obara-M et al., 2001 (IAGP)
Plant Structure	(PO:0020103)	Obara-M et al., 2001 (SM)
	(PO:0009025)	Gramene curators, 2007 (IC)
Plant Growth and Development Stage	(PO:0007130)	Obara-M et al., 2001 (SM)
	(PO:0007017)	Obara-M et al., 2001 (SM)
	(PO:0001054)	Gramene curators, 2007 (IC)
Growth Stage	(GRO:0007139)	Obara-M et al., 2001 (SM)
	(GRO:0007140)	Obara-M et al., 2001 (SM)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Obara-M et al., 2001 (SM)

Database Cross-References (1)

Gramene Literature	Obara-M, Kajiura-M, Fukuta-Y, Yano-M, Hayashi-M, Yamaya-T, Sato-T, "Mapping of QTLs associated with cytosolic glutamine synthetase and NADH-glutamate synthase in rice (Oryza sativa L.)", Journal of experimental botany, 2001, vol. 52, pp. 1209-1217

SNPs (112,163)

Chr	Start	Stop	Exp	Num. SNP Positions
chr8	3,173,452	28,248,441	~160K SNPs x 20 accessions (McNally 2...	6,769	Search for SNPs
chr8	3,173,452	28,248,441	'1536 chip' - 1311 SNPs x 395 rice ac...	70	Search for SNPs
chr8	3,173,452	28,248,441	Huang X, et al, Nat Genetics 2010 Nov...	51,678	Search for SNPs
chr8	3,173,452	28,248,441	RiceDiversity 44K SNP assay, 34 trait...	51,678	Search for SNPs
chr8	3,173,452	28,248,441	RiceDiversity 44K SNP assay, 34 trait...	1,968	Search for SNPs

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