QTL Accession ID | CQN34 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFSNS | ||||
Trait Name | leaf senescence | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 4 | ||||
Comments | The trait was assayed for the rate of full-discoloration (RFD). It was determined by chlorophyll content of the flag leaves at the 5 cm tip region, and was measured every 7day for 5 weeks from flowering to maturity. Single marker regressions were used to detect the association between markers and each trait using qGENE software. Significant differences (P<0.05) in marker class means were interpreted as likely linkage of each trait to the marker locus. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 27,830,899-29,389,036 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 4 | 87.1-97.7 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
CQN34 | 4 | 87.1 | 97.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1100 | RFLP | Oryza sativa | qtl_marker |
To | C62306S | RFLP | Oryza sativa | qtl_marker |
To | C79 | RFLP | Oryza sativa | qtl_marker |
To | S733 | RFLP | Oryza sativa | qtl_marker |
To | R3261 | RFLP | Oryza sativa | qtl_marker |
To | MWG503 | RFLP | Hordeum vulgare | qtl_marker |
To | R1783 | RFLP | Oryza sativa | qtl_marker |
To | CYC2F | RFLP | Oryza sativa | qtl_marker |
To | R738 | RFLP | Oryza sativa | qtl_marker |
To | R2737 | RFLP | Oryza sativa | qtl_marker |
To | G3015 | RFLP | Oryza sativa | qtl_marker |
To | S13536 | RFLP | Oryza sativa | qtl_marker |
To | E51196S | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000249) | Obara-M et al., 2001 (IAGP) Yamaya-T et al., 2002 (IAGP) |
Plant Structure | (PO:0020103) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
(PO:0009025) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007130) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
(PO:0007017) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
|
(PO:0001054) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
(GRO:0007140) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
|
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 27,830,899 | 29,389,036 | ~160K SNPs x 20 accessions (McNally 2... | 644 | Search for SNPs |
chr4 | 27,830,899 | 29,389,036 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
chr4 | 27,830,899 | 29,389,036 | Huang X, et al, Nat Genetics 2010 Nov... | 3,143 | Search for SNPs |
chr4 | 27,830,899 | 29,389,036 | RiceDiversity 44K SNP assay, 34 trait... | 3,143 | Search for SNPs |
chr4 | 27,830,899 | 29,389,036 | RiceDiversity 44K SNP assay, 34 trait... | 129 | Search for SNPs |