QTL Accession ID | CQN26 | ||||
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Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFSNS | ||||
Trait Name | leaf senescence | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 1 | ||||
Comments | The trait was assayed for the rate of half-discoloration (RHD). It was determined by chlorophyll content of the flag leaves at the 5 cm tip region, and was measured every 7day for 5 weeks from flowering to maturity. Single marker regressions were used to detect the association between markers and each trait using qGENE software. Significant differences (P<0.05) in marker class means were interpreted as likely linkage of each trait to the marker locus. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 6,736,882-39,129,065 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 1 | 38.8-106.2 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
CQN26 | 1 | 38.8 | 106.2 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000249) | Obara-M et al., 2001 (IAGP) |
Plant Structure | (PO:0020103) | Obara-M et al., 2001 (SM) |
(PO:0009025) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007130) | Obara-M et al., 2001 (SM) |
(PO:0007017) | Obara-M et al., 2001 (SM) | |
(PO:0001054) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Obara-M et al., 2001 (SM) |
(GRO:0007140) | Obara-M et al., 2001 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Obara-M et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 6,736,882 | 39,129,065 | ~160K SNPs x 20 accessions (McNally 2... | 19,298 | Search for SNPs |
chr1 | 6,736,882 | 39,129,065 | '1536 chip' - 1311 SNPs x 395 rice ac... | 103 | Search for SNPs |
chr1 | 6,736,882 | 39,129,065 | Huang X, et al, Nat Genetics 2010 Nov... | 63,905 | Search for SNPs |
chr1 | 6,736,882 | 39,129,065 | RiceDiversity 44K SNP assay, 34 trait... | 63,905 | Search for SNPs |
chr1 | 6,736,882 | 39,129,065 | RiceDiversity 44K SNP assay, 34 trait... | 4,150 | Search for SNPs |