QTL Accession ID | CQH29 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | BARTTH |
Trait Name | basal root thickness |
Published Symbol | brt9.1 |
Trait Synonym(s) | BRT |
Trait Category | Anatomy |
Chromosome | 9 |
Comments | Basal root thickness (BARTTH) was measured on roots 2-cm below the soil surface. Assay was repeated three times with three, five and five replications, respectively. The assays were carried out on plants 50 days after sowing (DAS). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 1,211,963-3,586,206 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CTIR CT9993/IR6226 QTL 2000 | BNL6.32 | 9 | 2.4-2.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQH29 | 9 | 2.4 | 2.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C313 | RFLP | Oryza sativa | qtl_marker |
To | C711 | RFLP | Oryza sativa | qtl_marker |
To | RZ698 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000094) | Zhang-J et al., 2001 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zhang-J et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr9 | 1,211,963 | 3,586,206 | ~160K SNPs x 20 accessions (McNally 2... | 532 | Search for SNPs |
chr9 | 1,211,963 | 3,586,206 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr9 | 1,211,963 | 3,586,206 | Huang X, et al, Nat Genetics 2010 Nov... | 1,460 | Search for SNPs |
chr9 | 1,211,963 | 3,586,206 | RiceDiversity 44K SNP assay, 34 trait... | 1,460 | Search for SNPs |
chr9 | 1,211,963 | 3,586,206 | RiceDiversity 44K SNP assay, 34 trait... | 161 | Search for SNPs |