QTL Accession ID | CQH11 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | BARTTH |
Trait Name | basal root thickness |
Published Symbol | brt3.1 |
Trait Synonym(s) | BRT |
Trait Category | Anatomy |
Chromosome | 3 |
Comments | Basal root thickness (BARTTH) was measured on roots 2-cm below the soil surface. Assay was repeated three times with three, five and five replications, respectively. The assays were carried out on plants 50 days after sowing (DAS). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 25,128,239-25,128,864 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CTIR CT9993/IR6226 QTL 2000 | BNL6.32 | 3 | 115.5-120.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQH11 | 3 | 115.5 | 120.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C746 | RFLP | Oryza sativa | qtl_marker |
To | RZ474 | RFLP | Oryza sativa | qtl_marker |
To | RZ598 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000094) | Zhang-J et al., 2001 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zhang-J et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 25,128,239 | 25,128,864 | ~160K SNPs x 20 accessions (McNally 2... | 3 | Search for SNPs |
chr3 | 25,128,239 | 25,128,864 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 25,128,239 | 25,128,864 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr3 | 25,128,239 | 25,128,864 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr3 | 25,128,239 | 25,128,864 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |