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Oryza sativa QTL "CQAP3" (scent)
| QTL Accession ID | CQAP3 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | AROMA | ||||
| Trait Name | scent | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Quality | ||||
| Chromosome | 12 | ||||
| Comments | The trait assay was based on gas chromatography quantification of 2-acetyl-1-pyrroline. This compound is known to be a major component of rice aroma. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 8,826,555-26,108,004 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 12 | 49.5-102.8 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAP3 | 12 | 49.5 | 102.8 |
Associated Markers (17)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM101 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RG341 | RFLP | Oryza sativa | qtl_marker |
| To | RM179 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM277 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM511 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM260 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM519 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RG457 | RFLP | Oryza sativa | qtl_marker |
| To | RM313 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM309 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM463 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RG901 | RFLP | Oryza sativa | qtl_marker |
| To | RM270 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM235 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RG958 | RFLP | Oryza sativa | qtl_marker |
| To | RM83 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM12 | SSR | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (11)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000087) | Lorieux-M et al., 1996 (IAGP) |
| Plant Structure | (PO:0009010) | Lorieux-M et al., 1996 (SM) |
| (PO:0000003) | Gramene curators, 2007 (IC) | |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007038 ) | Lorieux-M et al., 1996 (SM) |
| (PO:0007033) | Gramene curators, 2007 (IC) | |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007045) | Lorieux-M et al., 1996 (SM) |
| (GRO:0007001) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Lorieux-M et al., 1996 (SM) |
Database Cross-References (1)
SNPs (99,114)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 8,826,555 | 26,108,004 | ~160K SNPs x 20 accessions (McNally 2... | 5,942 | Search for SNPs |
| chr12 | 8,826,555 | 26,108,004 | '1536 chip' - 1311 SNPs x 395 rice ac... | 67 | Search for SNPs |
| chr12 | 8,826,555 | 26,108,004 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 633 | Search for SNPs |
| chr12 | 8,826,555 | 26,108,004 | Huang X, et al, Nat Genetics 2010 Nov... | 45,525 | Search for SNPs |
| chr12 | 8,826,555 | 26,108,004 | RiceDiversity 44K SNP assay, 34 trait... | 45,525 | Search for SNPs |
| chr12 | 8,826,555 | 26,108,004 | RiceDiversity 44K SNP assay, 34 trait... | 1,422 | Search for SNPs |
