QTL Accession ID | CQAP2 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | AROMA | ||||
Trait Name | scent | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Quality | ||||
Chromosome | 4 | ||||
Comments | The trait assay was based on gas chromatography quantification of 2-acetyl-1-pyrroline. This compound is known to be a major component of rice aroma. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 20,087,103-31,663,326 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 4 | 69.6-135.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAP2 | 4 | 69.6 | 135.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG788 | RFLP | Oryza sativa | qtl_marker |
To | RM564 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM119 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ565 | RFLP | Oryza sativa | qtl_marker |
To | RZ675 | RFLP | Oryza sativa | qtl_marker |
To | RM273 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM456 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM252 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM241 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG163 | RFLP | Oryza sativa | qtl_marker |
To | RM470 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM451 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM303 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM317 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG214 | RFLP | Oryza sativa | qtl_marker |
To | RM142 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ590 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000087) | Lorieux-M et al., 1996 (IAGP) |
Plant Structure | (PO:0009010) | Lorieux-M et al., 1996 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007038 ) | Lorieux-M et al., 1996 (SM) |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Lorieux-M et al., 1996 (SM) |
(GRO:0007001) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lorieux-M et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 20,087,103 | 31,663,326 | ~160K SNPs x 20 accessions (McNally 2... | 4,744 | Search for SNPs |
chr4 | 20,087,103 | 31,663,326 | '1536 chip' - 1311 SNPs x 395 rice ac... | 38 | Search for SNPs |
chr4 | 20,087,103 | 31,663,326 | Huang X, et al, Nat Genetics 2010 Nov... | 23,335 | Search for SNPs |
chr4 | 20,087,103 | 31,663,326 | RiceDiversity 44K SNP assay, 34 trait... | 23,335 | Search for SNPs |
chr4 | 20,087,103 | 31,663,326 | RiceDiversity 44K SNP assay, 34 trait... | 1,077 | Search for SNPs |