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Oryza sativa QTL "CQAL1" (grain length)
| QTL Accession ID | CQAL1 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | GRLG | ||||
| Trait Name | grain length | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Quality | ||||
| Chromosome | 3 | ||||
| Comments | QTL detected for grain quality trait of brown rice grains (dehulled grains). Population used was F2:3 |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 15,335,340-16,303,048 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Zh97/Ming63 CNHZAU F2 QTL 1999 | BNL6.32 | 3 | 149.7-173.2 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAL1 | 3 | 149.7 | 173.2 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C1087 | RFLP | Oryza sativa | qtl_marker |
| To | C269 | RFLP | Oryza sativa | qtl_marker |
| To | C63 | RFLP | Oryza sativa | qtl_marker |
| To | R1966 | RFLP | Oryza sativa | qtl_marker |
| To | G144 | RFLP | Oryza sativa | qtl_marker |
| To | RG393 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000734) | Tan-Y-F et al., 2000 (IAGP) |
| Plant Structure | (PO:0009001) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Tan-Y-F et al., 2000 (SM) |
Database Cross-References (1)
SNPs (5,092)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 15,335,340 | 16,303,048 | ~160K SNPs x 20 accessions (McNally 2... | 468 | Search for SNPs |
| chr3 | 15,335,340 | 16,303,048 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
| chr3 | 15,335,340 | 16,303,048 | Huang X, et al, Nat Genetics 2010 Nov... | 2,248 | Search for SNPs |
| chr3 | 15,335,340 | 16,303,048 | RiceDiversity 44K SNP assay, 34 trait... | 2,248 | Search for SNPs |
| chr3 | 15,335,340 | 16,303,048 | RiceDiversity 44K SNP assay, 34 trait... | 123 | Search for SNPs |
