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Oryza sativa QTL "CQAH21" (seed dormancy)
| QTL Accession ID | CQAH21 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | SDDOR |
| Trait Name | seed dormancy |
| Published Symbol | qDOR-5-1 |
| Trait Synonym(s) |
SDDOR dormancy |
| Trait Category | Vigor |
| Chromosome | 5 |
| Comments | Seed dormancy was assessed by carrying out germination efficiency test on intact seeds (with hull) 60 days after heading. QTL was detected by both simple and composite interval mapping. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 12,454,537-13,568,721 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 5 | 0-41.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAH21 | 5 | 0 | 41.1 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | BCD1072 | RFLP | Hordeum vulgare | qtl_marker |
| To | RZ296 | RFLP | Oryza sativa | qtl_marker |
| To | G366 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (9)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000253) | Cai-H-W et al., 2000 (IAGP) |
| Plant Structure | (PO:0009010) | Cai-H-W et al., 2000 (SM) |
| Plant Growth and Development Stage | (PO:0007132) | Cai-H-W et al., 2000 (SM) |
| (PO:0007057) | Cai-H-W et al., 2000 (SM) | |
| (PO:0007038) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007045) | Cai-H-W et al., 2000 (SM) |
| (GRO:0007043) | Cai-H-W et al., 2000 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cai-H-W et al., 2000 (SM) |
Database Cross-References (1)
SNPs (6,440)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr5 | 12,454,537 | 13,568,721 | ~160K SNPs x 20 accessions (McNally 2... | 251 | Search for SNPs |
| chr5 | 12,454,537 | 13,568,721 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
| chr5 | 12,454,537 | 13,568,721 | Huang X, et al, Nat Genetics 2010 Nov... | 3,071 | Search for SNPs |
| chr5 | 12,454,537 | 13,568,721 | RiceDiversity 44K SNP assay, 34 trait... | 3,071 | Search for SNPs |
| chr5 | 12,454,537 | 13,568,721 | RiceDiversity 44K SNP assay, 34 trait... | 45 | Search for SNPs |
