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Oryza sativa QTL "CQAD1" (allelopathic effect)
| QTL Accession ID | CQAD1 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | ALLELPATHEF |
| Trait Name | allelopathic effect |
| Published Symbol | |
| Trait Synonym(s) | allelopathy |
| Trait Category | Biotic stress |
| Chromosome | 1 |
| Comments | The allelopathic effect of F3 line of rice was assessed by the percent inhibition of growth (root length) of the germinating lettuce (Lactuca sativa) seedlings, by application of water-soluble leaf extracts from rice plants at 6-leaf growth stage. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 21,701,002-26,873,702 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | NIAR PI312777/Rex F2 QTL 2001 | BNL6.32 | 1b | 9.7-40.7 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAD1 | 1 | 9.7 | 40.7 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C122 | RFLP | Oryza sativa | qtl_marker |
| To | C1370 | RFLP | Oryza sativa | qtl_marker |
| To | C178 | RFLP | Oryza sativa | qtl_marker |
| To | R2159 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000624) | Ebana-K et al., 2001 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007005) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Ebana-K et al., 2001 (SM) |
Database Cross-References (1)
SNPs (32,146)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 21,701,002 | 26,873,702 | ~160K SNPs x 20 accessions (McNally 2... | 3,371 | Search for SNPs |
| chr1 | 21,701,002 | 26,873,702 | '1536 chip' - 1311 SNPs x 395 rice ac... | 25 | Search for SNPs |
| chr1 | 21,701,002 | 26,873,702 | Huang X, et al, Nat Genetics 2010 Nov... | 14,039 | Search for SNPs |
| chr1 | 21,701,002 | 26,873,702 | RiceDiversity 44K SNP assay, 34 trait... | 14,039 | Search for SNPs |
| chr1 | 21,701,002 | 26,873,702 | RiceDiversity 44K SNP assay, 34 trait... | 672 | Search for SNPs |
