QTL Accession ID | CQAC4 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | BLRS | ||||||
Trait Name | blast disease resistance | ||||||
Published Symbol | |||||||
Trait Synonym(s) |
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Trait Category | Biotic stress | ||||||
Chromosome | 12 | ||||||
Comments | QTL was identified in BC1F3 lines derived from two F3 plants from a cross between Nipponbare and Owarihatamochi. Aichiasahi a highly susceptible cultivar was used as a recurrent parent. Disease severity of 40-50 day old plants was scored using a rating from 0 (highly resistant: no symptoms) to 10 (highly susceptible with leaves totally dead) based on the diseased leaf area. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 11,058,522-18,867,702 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NIAR Nip/Owar F4 QTL 2001 | BNL6.32 | 12 | 4.5-65.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAC4 | 12 | 4.5 | 65.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C443 | RFLP | Oryza sativa | qtl_marker |
To | C625 | RFLP | Oryza sativa | qtl_marker |
To | G1112 | RFLP | Oryza sativa | qtl_marker |
To | RM104 | SSR | Oryza sativa | qtl_marker |
To | RM155 | SSR | Oryza sativa | qtl_marker |
To | G336 | RFLP | Oryza sativa | qtl_marker |
To | G2140 | RFLP | Oryza sativa | qtl_marker |
To | R732 | RFLP | Oryza sativa | qtl_marker |
To | G402 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000074) | Fukuoka-S et al., 2001 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007218) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Fukuoka-S et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 11,058,522 | 18,867,702 | ~160K SNPs x 20 accessions (McNally 2... | 2,014 | Search for SNPs |
chr12 | 11,058,522 | 18,867,702 | '1536 chip' - 1311 SNPs x 395 rice ac... | 28 | Search for SNPs |
chr12 | 11,058,522 | 18,867,702 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 11,058,522 | 18,867,702 | Huang X, et al, Nat Genetics 2010 Nov... | 19,844 | Search for SNPs |
chr12 | 11,058,522 | 18,867,702 | RiceDiversity 44K SNP assay, 34 trait... | 19,844 | Search for SNPs |
chr12 | 11,058,522 | 18,867,702 | RiceDiversity 44K SNP assay, 34 trait... | 545 | Search for SNPs |