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Oryza sativa QTL "CQAC3" (blast disease resistance)
| QTL Accession ID | CQAC3 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | BLRS | ||||||
| Trait Name | blast disease resistance | ||||||
| Published Symbol | |||||||
| Trait Synonym(s) |
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| Trait Category | Biotic stress | ||||||
| Chromosome | 9 | ||||||
| Comments | QTL was identified in BC1F3 lines derived from two F3 plants from a cross between Nipponbare and Owarihatamochi. Aichiasahi a highly susceptible cultivar was used as a recurrent parent. Disease severity of 40-50 day old plants was scored using a rating from 0 (highly resistant: no symptoms) to 10 (highly susceptible with leaves totally dead) based on the diseased leaf area. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 9,629,362-10,801,158 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | NIAR Nip/Owar F4 QTL 2001 | BNL6.32 | 9 | 22.2-38.2 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAC3 | 9 | 22.2 | 38.2 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C1454 | RFLP | Oryza sativa | qtl_marker |
| To | RM219 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | G103 | RFLP | Oryza sativa | qtl_marker |
| To | G160 | RFLP | Oryza sativa | qtl_marker |
| To | R1687 | RFLP | Oryza sativa | qtl_marker |
| To | R1751 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000074) | Fukuoka-S et al., 2001 (IAGP) |
| Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007218) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Fukuoka-S et al., 2001 (SM) |
Database Cross-References (1)
SNPs (7,010)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr9 | 9,629,362 | 10,801,158 | ~160K SNPs x 20 accessions (McNally 2... | 243 | Search for SNPs |
| chr9 | 9,629,362 | 10,801,158 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
| chr9 | 9,629,362 | 10,801,158 | Huang X, et al, Nat Genetics 2010 Nov... | 3,346 | Search for SNPs |
| chr9 | 9,629,362 | 10,801,158 | RiceDiversity 44K SNP assay, 34 trait... | 3,346 | Search for SNPs |
| chr9 | 9,629,362 | 10,801,158 | RiceDiversity 44K SNP assay, 34 trait... | 71 | Search for SNPs |
