QTL Accession ID | AQU047 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFSNS | ||||
Trait Name | leaf senescence | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 9 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 7,222,547-9,630,362 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TKU Integrated QTL 2002 | BNL6.32 | 9 | 34.1-34.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQU047 | 9 | 34.1 | 34.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM219 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ698 | RFLP | Oryza sativa | qtl_marker |
To | C1454 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000249) | Toojinda-T et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0001054) | Gramene curators, 2007 (IC) |
(PO:0007017) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Toojinda-T et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr9 | 7,222,547 | 9,630,362 | ~160K SNPs x 20 accessions (McNally 2... | 525 | Search for SNPs |
chr9 | 7,222,547 | 9,630,362 | '1536 chip' - 1311 SNPs x 395 rice ac... | 12 | Search for SNPs |
chr9 | 7,222,547 | 9,630,362 | Huang X, et al, Nat Genetics 2010 Nov... | 6,179 | Search for SNPs |
chr9 | 7,222,547 | 9,630,362 | RiceDiversity 44K SNP assay, 34 trait... | 6,179 | Search for SNPs |
chr9 | 7,222,547 | 9,630,362 | RiceDiversity 44K SNP assay, 34 trait... | 156 | Search for SNPs |