QTL Accession ID | AQU040 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFSNS | ||||
Trait Name | leaf senescence | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 7 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 20,345,771-20,346,668 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TKU Integrated QTL 2002 | BNL6.32 | 7 | 40.4-40.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQU040 | 7 | 40.4 | 40.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C451 | RFLP | Oryza sativa | qtl_marker |
To | RM11 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM182 | SSR | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000249) | Toojinda-T et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0001054) | Gramene curators, 2007 (IC) |
(PO:0007017) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Toojinda-T et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 20,345,771 | 20,346,668 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr7 | 20,345,771 | 20,346,668 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 20,345,771 | 20,346,668 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
chr7 | 20,345,771 | 20,346,668 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
chr7 | 20,345,771 | 20,346,668 | RiceDiversity 44K SNP assay, 34 trait... | 0 |