QTL Accession ID | AQHF047 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFSNS | ||||
Trait Name | leaf senescence | ||||
Published Symbol | QRrg3 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 3 | ||||
Comments | The relative retention of greenness (RDG), the ratio of RDG to DG, was measured to evaluate leaf senescence and used for QTL analysis. The QTL was detected using the phenotype data of 2004. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 33,709,088-33,709,541 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 3 | 150.5-158.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHF047 | 3 | 150.5 | 158.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM422 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM565 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM130 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM514 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000249) | Yue-B et al., 2006 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0001054) | Gramene curators, 2007 (IC) |
(PO:0007017) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yue-B et al., 2006 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 33,709,088 | 33,709,541 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr3 | 33,709,088 | 33,709,541 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 33,709,088 | 33,709,541 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr3 | 33,709,088 | 33,709,541 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr3 | 33,709,088 | 33,709,541 | RiceDiversity 44K SNP assay, 34 trait... | 0 |