QTL Accession ID | AQHF024 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFSNS | ||||
Trait Name | leaf senescence | ||||
Published Symbol | Qrga3 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 3 | ||||
Comments | Visual estimation of the retention of the green area (RGA) for leaves 15 days after heading on 1-5 scale (1---complete or nearly complete leaf death, 5---a complete green leaves) was measured to evaluate leaf senescence and used for QTL analysis. The QTL was detected using the phenotype data of 2003. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 33,709,088-33,709,541 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 3 | 150.5-158.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHF024 | 3 | 150.5 | 158.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM422 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM565 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM130 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM514 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000249) | Yue-B et al., 2006 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0001054) | Gramene curators, 2007 (IC) |
(PO:0007017) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yue-B et al., 2006 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 33,709,088 | 33,709,541 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr3 | 33,709,088 | 33,709,541 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 33,709,088 | 33,709,541 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr3 | 33,709,088 | 33,709,541 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr3 | 33,709,088 | 33,709,541 | RiceDiversity 44K SNP assay, 34 trait... | 0 |