QTL Accession ID | AQGJ010 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | BLRS | ||||||
Trait Name | blast disease resistance | ||||||
Published Symbol | |||||||
Trait Synonym(s) |
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Trait Category | Biotic stress | ||||||
Chromosome | 7 | ||||||
Comments | Lesion area (LA) has been measured to evaluate blast disease resistance and used for QTL analysis. The QTL has been detected under the low nitrogen condition. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 26,704,922-29,467,498 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Aberdeen Bala/Azu QTL 2002 | BNL6.32 | 7 | 179.7-179.7 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQGJ010 | 7 | 179.7 | 179.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C507 | RFLP | Oryza sativa | qtl_marker |
To | RG351 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000074) | Talukder-Z-I et al., 2005 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007218) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Talukder-Z-I et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 26,704,922 | 29,467,498 | ~160K SNPs x 20 accessions (McNally 2... | 878 | Search for SNPs |
chr7 | 26,704,922 | 29,467,498 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
chr7 | 26,704,922 | 29,467,498 | Huang X, et al, Nat Genetics 2010 Nov... | 6,898 | Search for SNPs |
chr7 | 26,704,922 | 29,467,498 | RiceDiversity 44K SNP assay, 34 trait... | 6,898 | Search for SNPs |
chr7 | 26,704,922 | 29,467,498 | RiceDiversity 44K SNP assay, 34 trait... | 240 | Search for SNPs |