QTL Accession ID | AQGA008 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | AMYCN | ||||
Trait Name | amylose content | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Quality | ||||
Chromosome | 6 | ||||
Comments | This locus was found to have significant interaction with another locus, AQGA007. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 441,616-5,425,631 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 6 | 0-39.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGA008 | 6 | 0 | 39.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM508 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM435 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM170 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM589 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM190 | SSR | Oryza sativa | qtl_marker |
To | RM587 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM510 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM584 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM225 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM314 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM111 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM253 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM6119 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM402 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000196) | Fan-C-C et al., 2005 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Fan-C-C et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 441,616 | 5,425,631 | ~160K SNPs x 20 accessions (McNally 2... | 3,227 | Search for SNPs |
chr6 | 441,616 | 5,425,631 | '1536 chip' - 1311 SNPs x 395 rice ac... | 31 | Search for SNPs |
chr6 | 441,616 | 5,425,631 | Huang X, et al, Nat Genetics 2010 Nov... | 12,404 | Search for SNPs |
chr6 | 441,616 | 5,425,631 | RiceDiversity 44K SNP assay, 34 trait... | 12,404 | Search for SNPs |
chr6 | 441,616 | 5,425,631 | RiceDiversity 44K SNP assay, 34 trait... | 647 | Search for SNPs |