QTL Accession ID | AQFV004 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDLVIG |
Trait Name | seedling vigor |
Published Symbol | qSV-3-1 |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 3 |
Comments | Dry weight (DW) was measured to evaluate seedling vigor at temperature 25C condition and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 23,088,332-28,232,092 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 167-229 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFV004 | 3 | 167 | 229 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM16 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ403 | RFLP | Oryza sativa | qtl_marker |
To | RG482 | RFLP | Oryza sativa | qtl_marker |
To | RZ474 | RFLP | Oryza sativa | qtl_marker |
To | C746 | RFLP | Oryza sativa | qtl_marker |
To | CDO337 | RFLP | Avena sativa | qtl_marker |
To | RM135 | SSR | Oryza sativa | qtl_marker |
To | RM168 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM156 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ761 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000280) | Zhang-Z-H et al., 2005 (IAGP) |
Plant Structure | (PO:0009003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007131) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007043) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zhang-Z-H et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 23,088,332 | 28,232,092 | ~160K SNPs x 20 accessions (McNally 2... | 2,524 | Search for SNPs |
chr3 | 23,088,332 | 28,232,092 | '1536 chip' - 1311 SNPs x 395 rice ac... | 16 | Search for SNPs |
chr3 | 23,088,332 | 28,232,092 | Huang X, et al, Nat Genetics 2010 Nov... | 12,689 | Search for SNPs |
chr3 | 23,088,332 | 28,232,092 | RiceDiversity 44K SNP assay, 34 trait... | 12,689 | Search for SNPs |
chr3 | 23,088,332 | 28,232,092 | RiceDiversity 44K SNP assay, 34 trait... | 946 | Search for SNPs |