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Oryza sativa QTL "AQFU018" (alkali digestion)
| QTL Accession ID | AQFU018 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | ALKDIG | ||||
| Trait Name | alkali digestion | ||||
| Published Symbol | alk6-1 | ||||
| Trait Synonym(s) |
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| Trait Category | Quality | ||||
| Chromosome | 6 | ||||
| Comments | The allelic source of this QTL is "IRGC 103544". |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 1,764,586-5,425,631 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | LSU Caiapo/IRGC103544 QTL 2004 | BNL6.32 | 6 | 0-116 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFU018 | 6 | 0 | 116 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM190 | SSR | Oryza sativa | qtl_marker |
| To | RM253 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM162 | SSR | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (11)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000134) | Aluko-G et al., 2004 (IAGP) |
| Plant Structure | (PO:0009010) | Aluko-G et al., 2004 (SM) |
| (PO:0000003) | Gramene curators, 2007 (IC) | |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007038 ) | Aluko-G et al., 2004 (SM) |
| (PO:0007033) | Gramene curators, 2007 (IC) | |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007045) | Aluko-G et al., 2004 (SM) |
| (GRO:0007001) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Aluko-G et al., 2004 (SM) |
Database Cross-References (1)
SNPs (20,453)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 1,764,586 | 5,425,631 | ~160K SNPs x 20 accessions (McNally 2... | 2,223 | Search for SNPs |
| chr6 | 1,764,586 | 5,425,631 | '1536 chip' - 1311 SNPs x 395 rice ac... | 22 | Search for SNPs |
| chr6 | 1,764,586 | 5,425,631 | Huang X, et al, Nat Genetics 2010 Nov... | 8,874 | Search for SNPs |
| chr6 | 1,764,586 | 5,425,631 | RiceDiversity 44K SNP assay, 34 trait... | 8,874 | Search for SNPs |
| chr6 | 1,764,586 | 5,425,631 | RiceDiversity 44K SNP assay, 34 trait... | 460 | Search for SNPs |
