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Oryza sativa QTL "AQFT015" (basal root thickness)
| QTL Accession ID | AQFT015 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | BARTTH |
| Trait Name | basal root thickness |
| Published Symbol | brt8.1 |
| Trait Synonym(s) | BRT |
| Trait Category | Anatomy |
| Chromosome | 8 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 27,553,671-27,555,414 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | MU CT9993/IR6226 QTL 2004 | BNL6.32 | 8 | 140.7-143.8 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFT015 | 8 | 140.7 | 143.8 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ997 | RFLP | Oryza sativa | qtl_marker |
| To | RZ572 | RFLP | Oryza sativa | qtl_marker |
| To | G187 | RFLP | Oryza sativa | qtl_marker |
| To | RG598 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000094) | Nguyen-T-T et al., 2004 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Nguyen-T-T et al., 2004 (SM) |
Database Cross-References (1)
SNPs (6)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr8 | 27,553,671 | 27,555,414 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr8 | 27,553,671 | 27,555,414 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr8 | 27,553,671 | 27,555,414 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
| chr8 | 27,553,671 | 27,555,414 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
| chr8 | 27,553,671 | 27,555,414 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
