QTL Accession ID | AQFT014 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | BARTTH |
Trait Name | basal root thickness |
Published Symbol | brt7.1 |
Trait Synonym(s) | BRT |
Trait Category | Anatomy |
Chromosome | 7 |
Comments | A new drought-inducible cDNA clone, I12A1, was mapped near to this QTL region with a distance of 7.1 cM. This putative gene I12A1 codes for a UDP-glucose 4-epimerase homolog, which is involved in the cell wall biogenesis pathway and hence may be implicated in modulating the ability of rice roots to penetrate further into the substratum when exposed to drought conditions. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 1,160,982-1,537,879 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | MU CT9993/IR6226 QTL 2004 | BNL6.32 | 7 | 12.4-19.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFT014 | 7 | 12.4 | 19.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG417 | RFLP | Oryza sativa | qtl_marker |
To | RG528 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000094) | Nguyen-T-T et al., 2004 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Nguyen-T-T et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 1,160,982 | 1,537,879 | ~160K SNPs x 20 accessions (McNally 2... | 35 | Search for SNPs |
chr7 | 1,160,982 | 1,537,879 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 1,160,982 | 1,537,879 | Huang X, et al, Nat Genetics 2010 Nov... | 390 | Search for SNPs |
chr7 | 1,160,982 | 1,537,879 | RiceDiversity 44K SNP assay, 34 trait... | 390 | Search for SNPs |
chr7 | 1,160,982 | 1,537,879 | RiceDiversity 44K SNP assay, 34 trait... | 21 | Search for SNPs |