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Oryza sativa QTL "AQFR020" (seedling vigor)
| QTL Accession ID | AQFR020 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | SDLVIG |
| Trait Name | seedling vigor |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Vigor |
| Chromosome | 6 |
| Comments | The germination rate at seven days after incubation was measured to evaluate seedling vigor and used for QTL analysis. This locus was found to have significant interaction with another locus, AQFR21. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 1,764,586-1,822,651 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 6 | 8.7-17.3 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFR020 | 6 | 8.7 | 17.3 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM190 | SSR | Oryza sativa | qtl_marker |
| To | C76 | RFLP | Oryza sativa | qtl_marker |
| To | RZ762 | RFLP | Oryza sativa | qtl_marker |
| To | RZ516 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000280) | Huang-Z et al., 2004 (IAGP) |
| Plant Structure | (PO:0009003) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007131) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007043) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Huang-Z et al., 2004 (SM) |
Database Cross-References (1)
SNPs (405)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 1,764,586 | 1,822,651 | ~160K SNPs x 20 accessions (McNally 2... | 67 | Search for SNPs |
| chr6 | 1,764,586 | 1,822,651 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
| chr6 | 1,764,586 | 1,822,651 | Huang X, et al, Nat Genetics 2010 Nov... | 161 | Search for SNPs |
| chr6 | 1,764,586 | 1,822,651 | RiceDiversity 44K SNP assay, 34 trait... | 161 | Search for SNPs |
| chr6 | 1,764,586 | 1,822,651 | RiceDiversity 44K SNP assay, 34 trait... | 13 | Search for SNPs |
