QTL Accession ID | AQFR013 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDLVIG |
Trait Name | seedling vigor |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 8 |
Comments | The shoot length of seedling at fifteen days after incubation was measured to evaluate seedling vigor and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 26,281,140-27,831,422 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 8 | 207.5-258.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFR013 | 8 | 207.5 | 258.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM230 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G56 | RFLP | Oryza sativa | qtl_marker |
To | R662 | RFLP | Oryza sativa | qtl_marker |
To | RM264 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM149 | SSR | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000280) | Huang-Z et al., 2004 (IAGP) |
Plant Structure | (PO:0009003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007131) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007043) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Huang-Z et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 26,281,140 | 27,831,422 | ~160K SNPs x 20 accessions (McNally 2... | 556 | Search for SNPs |
chr8 | 26,281,140 | 27,831,422 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
chr8 | 26,281,140 | 27,831,422 | Huang X, et al, Nat Genetics 2010 Nov... | 3,657 | Search for SNPs |
chr8 | 26,281,140 | 27,831,422 | RiceDiversity 44K SNP assay, 34 trait... | 3,657 | Search for SNPs |
chr8 | 26,281,140 | 27,831,422 | RiceDiversity 44K SNP assay, 34 trait... | 163 | Search for SNPs |