QTL Accession ID | AQFR009 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDLVIG |
Trait Name | seedling vigor |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 7 |
Comments | The dry weight of seedling at fifteen days after incubation was measured to evaluate seedling vigor and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 18,683,511-18,686,761 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 7 | 39.6-41.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFR009 | 7 | 39.6 | 41.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C285 | RFLP | Oryza sativa | qtl_marker |
To | RG678 | RFLP | Oryza sativa | qtl_marker |
To | CDO385 | RFLP | Avena sativa | qtl_marker |
To | G20 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000280) | Huang-Z et al., 2004 (IAGP) |
Plant Structure | (PO:0009003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007131) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007043) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Huang-Z et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 18,683,511 | 18,686,761 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr7 | 18,683,511 | 18,686,761 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 18,683,511 | 18,686,761 | Huang X, et al, Nat Genetics 2010 Nov... | 11 | Search for SNPs |
chr7 | 18,683,511 | 18,686,761 | RiceDiversity 44K SNP assay, 34 trait... | 11 | Search for SNPs |
chr7 | 18,683,511 | 18,686,761 | RiceDiversity 44K SNP assay, 34 trait... | 0 |