QTL Accession ID | AQF096 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | KClO3RS |
Trait Name | KClO3 resistance |
Published Symbol | |
Trait Synonym(s) | potassium chlorate resistance |
Trait Category | Abiotic stress |
Chromosome | 3 |
Comments | Related with indica and japonica subspecies diagnostic trait. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 28,848,900-33,841,716 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 3 | 276.7-345.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQF096 | 3 | 276.7 | 345.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R1927 | RFLP | Oryza sativa | qtl_marker |
To | CDO122 | RFLP | Avena sativa | qtl_marker |
To | BCD450 | RFLP | Hordeum vulgare | qtl_marker |
To | Pgi1 | RFLP | Oryza sativa | qtl_marker |
To | RZ393 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000502) | Cai-W et al., 2002 (IAGP) |
Plant Structure | (PO:0000003) | Cai-W et al., 2002 (SM) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007134) | Cai-W et al., 2002 (SM) |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Cai-W et al., 2002 (SM) |
(GRO:0007001) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007293) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cai-W et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 28,848,900 | 33,841,716 | ~160K SNPs x 20 accessions (McNally 2... | 2,990 | Search for SNPs |
chr3 | 28,848,900 | 33,841,716 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
chr3 | 28,848,900 | 33,841,716 | Huang X, et al, Nat Genetics 2010 Nov... | 10,329 | Search for SNPs |
chr3 | 28,848,900 | 33,841,716 | RiceDiversity 44K SNP assay, 34 trait... | 10,329 | Search for SNPs |
chr3 | 28,848,900 | 33,841,716 | RiceDiversity 44K SNP assay, 34 trait... | 518 | Search for SNPs |