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Oryza sativa QTL "AQF089" (basic vegetative phase)
| QTL Accession ID | AQF089 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | BAVEGPH |
| Trait Name | basic vegetative phase |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Development |
| Chromosome | 4 |
| Comments | Related with heading behavior. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 14,706,596-20,173,040 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 4 | 57.9-99.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQF089 | 4 | 57.9 | 99.1 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ656 | RFLP | Oryza sativa | qtl_marker |
| To | G271 | RFLP | Oryza sativa | qtl_marker |
| To | C174 | RFLP | Oryza sativa | qtl_marker |
| To | G162 | RFLP | Oryza sativa | qtl_marker |
| To | G282 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (10)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000461) | Cai-W et al., 2002 (IAGP) |
| Plant Structure | (PO:0000003) | Cai-W et al., 2002 (SM) |
| (PO:0009049) | Gramene curators, 2007 (IC) | |
| (PO:0020141) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007134) | Cai-W et al., 2002 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Cai-W et al., 2002 (SM) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cai-W et al., 2002 (SM) |
Database Cross-References (1)
SNPs (33,254)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 14,706,596 | 20,173,040 | ~160K SNPs x 20 accessions (McNally 2... | 1,800 | Search for SNPs |
| chr4 | 14,706,596 | 20,173,040 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
| chr4 | 14,706,596 | 20,173,040 | Huang X, et al, Nat Genetics 2010 Nov... | 15,521 | Search for SNPs |
| chr4 | 14,706,596 | 20,173,040 | RiceDiversity 44K SNP assay, 34 trait... | 15,521 | Search for SNPs |
| chr4 | 14,706,596 | 20,173,040 | RiceDiversity 44K SNP assay, 34 trait... | 394 | Search for SNPs |
