QTL Accession ID | AQF044 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | AWNLG |
Trait Name | awn length |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 3 |
Comments | Related with life-history trait. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 32,309,013-33,841,716 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 3 | 253-253 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQF044 | 3 | 253 | 253 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | Pgi1 | RFLP | Oryza sativa | qtl_marker |
To | G232 | RFLP | Oryza sativa | qtl_marker |
To | R1927 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000072) | Cai-W et al., 2002 (IAGP) |
Plant Structure | (PO:0006032) | Cai-W et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Cai-W et al., 2002 (SM) |
(PO:0007132) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Cai-W et al., 2002 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cai-W et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 32,309,013 | 33,841,716 | ~160K SNPs x 20 accessions (McNally 2... | 938 | Search for SNPs |
chr3 | 32,309,013 | 33,841,716 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr3 | 32,309,013 | 33,841,716 | Huang X, et al, Nat Genetics 2010 Nov... | 2,872 | Search for SNPs |
chr3 | 32,309,013 | 33,841,716 | RiceDiversity 44K SNP assay, 34 trait... | 2,872 | Search for SNPs |
chr3 | 32,309,013 | 33,841,716 | RiceDiversity 44K SNP assay, 34 trait... | 147 | Search for SNPs |