QTL Accession ID | AQF043 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | AWNLG |
Trait Name | awn length |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 3 |
Comments | Related with life-history trait. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 15,335,340-27,128,592 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 3 | 90.8-150.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQF043 | 3 | 90.8 | 150.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | BCD454 | RFLP | Hordeum vulgare | qtl_marker |
To | G144 | RFLP | Oryza sativa | qtl_marker |
To | C746 | RFLP | Oryza sativa | qtl_marker |
To | RZ329 | RFLP | Oryza sativa | qtl_marker |
To | G249 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000072) | Cai-W et al., 2002 (IAGP) |
Plant Structure | (PO:0006032) | Cai-W et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Cai-W et al., 2002 (SM) |
(PO:0007132) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Cai-W et al., 2002 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cai-W et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 15,335,340 | 27,128,592 | ~160K SNPs x 20 accessions (McNally 2... | 3,651 | Search for SNPs |
chr3 | 15,335,340 | 27,128,592 | '1536 chip' - 1311 SNPs x 395 rice ac... | 22 | Search for SNPs |
chr3 | 15,335,340 | 27,128,592 | Huang X, et al, Nat Genetics 2010 Nov... | 28,839 | Search for SNPs |
chr3 | 15,335,340 | 27,128,592 | RiceDiversity 44K SNP assay, 34 trait... | 28,839 | Search for SNPs |
chr3 | 15,335,340 | 27,128,592 | RiceDiversity 44K SNP assay, 34 trait... | 920 | Search for SNPs |