QTL Accession ID | AQEZ006 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | ALSN | ||||
Trait Name | aluminum sensitivity | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 1 | ||||
Comments | Relative root length after two week Al treatment was measured to evaluate aluminum sensitivity and used for QTL analysis. Four Al induced ESTs located in this region were screened by reverse Northern analysis and confirmed by Northern analysis. Two transcript-derived fragments (TDFs) regulated by Al stress, OsAR28 and OsAR16, were respectively mapped on the interval of this QTL. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 40,343,585-40,567,354 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNZU IR1552/Azu RI QTL 2004 | BNL6.32 | 1 | 221.8-237.8 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQEZ006 | 1 | 221.8 | 237.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG381 | RFLP | Oryza sativa | qtl_marker |
To | RG323 | RFLP | Oryza sativa | qtl_marker |
To | RZ801 | RFLP | Oryza sativa | qtl_marker |
To | R3203 | RFLP | Oryza sativa | qtl_marker |
To | RG222 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000354) | Mao-C-Z et al., 2004 (IAGP) Mao-C et al., 2004 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007306) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mao-C-Z et al., 2004 (SM) Mao-C et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 40,343,585 | 40,567,354 | ~160K SNPs x 20 accessions (McNally 2... | 122 | Search for SNPs |
chr1 | 40,343,585 | 40,567,354 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 40,343,585 | 40,567,354 | Huang X, et al, Nat Genetics 2010 Nov... | 499 | Search for SNPs |
chr1 | 40,343,585 | 40,567,354 | RiceDiversity 44K SNP assay, 34 trait... | 499 | Search for SNPs |
chr1 | 40,343,585 | 40,567,354 | RiceDiversity 44K SNP assay, 34 trait... | 29 | Search for SNPs |