QTL Accession ID | AQEP008 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDLVIG |
Trait Name | seedling vigor |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 1 |
Comments | Root length under 25 C temperature condition was measured to evaluate seedling vigor and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 34,937,981-40,743,227 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | UCD Lab/Bla QTL 1998 | BNL6.32 | 1 | 166-222 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEP008 | 1 | 166 | 222 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ730 | RFLP | Oryza sativa | qtl_marker |
To | RG222 | RFLP | Oryza sativa | qtl_marker |
To | RG101 | RFLP | Oryza sativa | qtl_marker |
To | RG536 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000280) | Redona-E-D et al., 1996 (IAGP) |
Plant Structure | (PO:0009003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007131) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007043) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Redona-E-D et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 34,937,981 | 40,743,227 | ~160K SNPs x 20 accessions (McNally 2... | 4,054 | Search for SNPs |
chr1 | 34,937,981 | 40,743,227 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
chr1 | 34,937,981 | 40,743,227 | Huang X, et al, Nat Genetics 2010 Nov... | 8,249 | Search for SNPs |
chr1 | 34,937,981 | 40,743,227 | RiceDiversity 44K SNP assay, 34 trait... | 8,249 | Search for SNPs |
chr1 | 34,937,981 | 40,743,227 | RiceDiversity 44K SNP assay, 34 trait... | 765 | Search for SNPs |