QTL Accession ID | AQEP005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDLVIG |
Trait Name | seedling vigor |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 5 |
Comments | Shoot length under 18 C temperature condition was measured to evaluate seedling vigor and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 24,261,900-29,095,211 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | UCD Lab/Bla QTL 1998 | BNL6.32 | 5 | 112-141 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEP005 | 5 | 112 | 141 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ70 | RFLP | Oryza sativa | qtl_marker |
To | RG697 | RFLP | Oryza sativa | qtl_marker |
To | RG435 | RFLP | Oryza sativa | qtl_marker |
To | CDO202 | RFLP | Avena sativa | qtl_marker |
To | RZ67 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000280) | Redona-E-D et al., 1996 (IAGP) |
Plant Structure | (PO:0009003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007131) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007043) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Redona-E-D et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 24,261,900 | 29,095,211 | ~160K SNPs x 20 accessions (McNally 2... | 3,459 | Search for SNPs |
chr5 | 24,261,900 | 29,095,211 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
chr5 | 24,261,900 | 29,095,211 | Huang X, et al, Nat Genetics 2010 Nov... | 3,564 | Search for SNPs |
chr5 | 24,261,900 | 29,095,211 | RiceDiversity 44K SNP assay, 34 trait... | 3,564 | Search for SNPs |
chr5 | 24,261,900 | 29,095,211 | RiceDiversity 44K SNP assay, 34 trait... | 566 | Search for SNPs |