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Oryza sativa QTL "AQEN009" (blast disease resistance)
| QTL Accession ID | AQEN009 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | BLRS | ||||||
| Trait Name | blast disease resistance | ||||||
| Published Symbol | |||||||
| Trait Synonym(s) |
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| Trait Category | Biotic stress | ||||||
| Chromosome | 11 | ||||||
| Comments | Leaf lesion number was measured in the greenhouse to evaluate leaf blast resistance and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 18,178,768-20,337,612 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Mor/CO39 QTL 1994 | BNL6.32 | 11 | 14.6-30.4 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEN009 | 11 | 14.6 | 30.4 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG103 | RFLP | Oryza sativa Indica Group | qtl_marker |
| To | RG16 | RFLP | Oryza sativa | qtl_marker |
| To | CDO365 | RFLP | Avena sativa | qtl_marker |
| To | RG1109 | RFLP | Oryza sativa | qtl_marker |
| To | RG211 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000074) | Wang-G-L et al., 1994 (IAGP) |
| Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007218) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Wang-G-L et al., 1994 (SM) |
Database Cross-References (2)
SNPs (17,568)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 18,178,768 | 20,337,612 | ~160K SNPs x 20 accessions (McNally 2... | 1,148 | Search for SNPs |
| chr11 | 18,178,768 | 20,337,612 | '1536 chip' - 1311 SNPs x 395 rice ac... | 12 | Search for SNPs |
| chr11 | 18,178,768 | 20,337,612 | Huang X, et al, Nat Genetics 2010 Nov... | 8,075 | Search for SNPs |
| chr11 | 18,178,768 | 20,337,612 | RiceDiversity 44K SNP assay, 34 trait... | 8,075 | Search for SNPs |
| chr11 | 18,178,768 | 20,337,612 | RiceDiversity 44K SNP assay, 34 trait... | 258 | Search for SNPs |
