QTL Accession ID | AQEI113 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFSNS | ||||
Trait Name | leaf senescence | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 6 | ||||
Comments | Visual estimation of the retention of the green-area for flag leaf at 30 days after heading was measured to evaluate leaf senescence and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 19,499,320-27,252,383 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 6 | 75.7-92.8 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQEI113 | 6 | 75.7 | 92.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM3 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM162 | SSR | Oryza sativa | qtl_marker |
To | RM136 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM150 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM275 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000249) | Jiang-G-H et al., 2004 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0001054) | Gramene curators, 2007 (IC) |
(PO:0007017) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Jiang-G-H et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 19,499,320 | 27,252,383 | ~160K SNPs x 20 accessions (McNally 2... | 4,983 | Search for SNPs |
chr6 | 19,499,320 | 27,252,383 | '1536 chip' - 1311 SNPs x 395 rice ac... | 30 | Search for SNPs |
chr6 | 19,499,320 | 27,252,383 | Huang X, et al, Nat Genetics 2010 Nov... | 14,403 | Search for SNPs |
chr6 | 19,499,320 | 27,252,383 | RiceDiversity 44K SNP assay, 34 trait... | 14,403 | Search for SNPs |
chr6 | 19,499,320 | 27,252,383 | RiceDiversity 44K SNP assay, 34 trait... | 884 | Search for SNPs |