QTL Accession ID | AQEI086 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFSNS | ||||
Trait Name | leaf senescence | ||||
Published Symbol | rrgs2 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 2 | ||||
Comments | Ratio of chlorophyll content of second leaf measured at heading date to that measured at 30 days after heading was calculated to evaluate leaf senescence and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 25,865,334-27,610,063 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 2 | 162.1-168.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEI086 | 2 | 162.1 | 168.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM263 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM221 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM262 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM6 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000249) | Jiang-G-H et al., 2004 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0001054) | Gramene curators, 2007 (IC) |
(PO:0007017) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Jiang-G-H et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 25,865,334 | 27,610,063 | ~160K SNPs x 20 accessions (McNally 2... | 722 | Search for SNPs |
chr2 | 25,865,334 | 27,610,063 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
chr2 | 25,865,334 | 27,610,063 | Huang X, et al, Nat Genetics 2010 Nov... | 4,672 | Search for SNPs |
chr2 | 25,865,334 | 27,610,063 | RiceDiversity 44K SNP assay, 34 trait... | 4,672 | Search for SNPs |
chr2 | 25,865,334 | 27,610,063 | RiceDiversity 44K SNP assay, 34 trait... | 176 | Search for SNPs |