QTL Accession ID | AQEI044 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFSNS | ||||
Trait Name | leaf senescence | ||||
Published Symbol | |||||
Trait Synonym(s) |
|
||||
Trait Category | Development | ||||
Chromosome | 1 | ||||
Comments | Chlorophyll content of second leaf at 30 days after heading was measured to evaluate leaf senescence and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 36,734,135-40,167,060 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 1 | 181.3-198.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEI044 | 1 | 181.3 | 198.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM315 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM104 | SSR | Oryza sativa | qtl_marker |
To | RM265 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM14 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000249) | Jiang-G-H et al., 2004 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0001054) | Gramene curators, 2007 (IC) |
(PO:0007017) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Jiang-G-H et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 36,734,135 | 40,167,060 | ~160K SNPs x 20 accessions (McNally 2... | 2,310 | Search for SNPs |
chr1 | 36,734,135 | 40,167,060 | '1536 chip' - 1311 SNPs x 395 rice ac... | 13 | Search for SNPs |
chr1 | 36,734,135 | 40,167,060 | Huang X, et al, Nat Genetics 2010 Nov... | 4,349 | Search for SNPs |
chr1 | 36,734,135 | 40,167,060 | RiceDiversity 44K SNP assay, 34 trait... | 4,349 | Search for SNPs |
chr1 | 36,734,135 | 40,167,060 | RiceDiversity 44K SNP assay, 34 trait... | 422 | Search for SNPs |