QTL Accession ID | AQDY104 | ||||||||||
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Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | |||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 6 | ||||||||||
Comments | The phenotypic experiment was conducted under irrigated field conditions during the 2000 wet season (Jun-Oct, 00WS) at the International Rice Research Institute, Los Banos, Philippines. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 26,161,226-30,823,968 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mil23/Aki RI QTL 2003 | BNL6.32 | 6 | 60.6-87.9 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQDY104 | 6 | 60.6 | 87.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G1314 | RFLP | Oryza sativa | qtl_marker |
To | G12 | RFLP | Oryza sativa | qtl_marker |
To | XNpb135 | RFLP | Oryza sativa | qtl_marker |
To | G342 | RFLP | Oryza sativa | qtl_marker |
To | G2140 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Kobayashi-S et al., 2003 (IAGP) |
Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kobayashi-S et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 26,161,226 | 30,823,968 | ~160K SNPs x 20 accessions (McNally 2... | 2,746 | Search for SNPs |
chr6 | 26,161,226 | 30,823,968 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
chr6 | 26,161,226 | 30,823,968 | Huang X, et al, Nat Genetics 2010 Nov... | 10,495 | Search for SNPs |
chr6 | 26,161,226 | 30,823,968 | RiceDiversity 44K SNP assay, 34 trait... | 10,495 | Search for SNPs |
chr6 | 26,161,226 | 30,823,968 | RiceDiversity 44K SNP assay, 34 trait... | 550 | Search for SNPs |