QTL Accession ID | AQDY059 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CULMLG |
Trait Name | culm length |
Published Symbol | |
Trait Synonym(s) |
CL cml |
Trait Category | Anatomy |
Chromosome | 3 |
Comments | The phenotypic experiment was conducted under irrigated field conditions during May-Oct in 1995 (95 J) at the former Hokuriku National Agricultural Experiment Station, Japan. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 30,313,472-35,710,936 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mil23/Aki RI QTL 2003 | BNL6.32 | 3 | 89.3-110 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDY059 | 3 | 89.3 | 110 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G249 | RFLP | Oryza sativa | qtl_marker |
To | XNpb48 | RFLP | Oryza sativa | qtl_marker |
To | G1318 | RFLP | Oryza sativa | qtl_marker |
To | C136 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000576) | Kobayashi-S et al., 2003 (IAGP) |
Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kobayashi-S et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 30,313,472 | 35,710,936 | ~160K SNPs x 20 accessions (McNally 2... | 3,404 | Search for SNPs |
chr3 | 30,313,472 | 35,710,936 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
chr3 | 30,313,472 | 35,710,936 | Huang X, et al, Nat Genetics 2010 Nov... | 12,287 | Search for SNPs |
chr3 | 30,313,472 | 35,710,936 | RiceDiversity 44K SNP assay, 34 trait... | 12,287 | Search for SNPs |
chr3 | 30,313,472 | 35,710,936 | RiceDiversity 44K SNP assay, 34 trait... | 596 | Search for SNPs |