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Oryza sativa QTL "AQDO008" (invitro regeneration ability)
| QTL Accession ID | AQDO008 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | INVRAB | ||||||
| Trait Name | invitro regeneration ability | ||||||
| Published Symbol | qRg4b | ||||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||||
| Chromosome | 4 | ||||||
| Comments | Regeneration rate (RR) was measured to evaluate regeneration ability and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 24,690,120-30,445,683 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 4 | 76.5-102.1 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDO008 | 4 | 76.5 | 102.1 |
Associated Markers (51)
Associated Genes (0)
Associated Ontologies (9)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000243) | Taguchi-Shiobara-F et al., 1997 (IAGP) |
| Plant Structure | (PO:0000009) | Taguchi-Shiobara-F et al., 1997 (SM) |
| (PO:0000003) | Gramene curators, 2007 (IC) | |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0009012) | Taguchi-Shiobara-F et al., 1997 (SM) |
| (PO:0007033) | Taguchi-Shiobara-F et al., 1997 (SM) | |
| Growth Stage | (GRO:0007001) | Taguchi-Shiobara-F et al., 1997 (SM) |
| Environment | (EO:0007266) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Taguchi-Shiobara-F et al., 1997 (SM) |
Database Cross-References (1)
SNPs (21,580)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 24,690,120 | 30,445,683 | ~160K SNPs x 20 accessions (McNally 2... | 2,045 | Search for SNPs |
| chr4 | 24,690,120 | 30,445,683 | '1536 chip' - 1311 SNPs x 395 rice ac... | 12 | Search for SNPs |
| chr4 | 24,690,120 | 30,445,683 | Huang X, et al, Nat Genetics 2010 Nov... | 9,535 | Search for SNPs |
| chr4 | 24,690,120 | 30,445,683 | RiceDiversity 44K SNP assay, 34 trait... | 9,535 | Search for SNPs |
| chr4 | 24,690,120 | 30,445,683 | RiceDiversity 44K SNP assay, 34 trait... | 453 | Search for SNPs |
