QTL Accession ID | AQDO004 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | INVRAB | ||||||
Trait Name | invitro regeneration ability | ||||||
Published Symbol | qRg4b | ||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||
Chromosome | 4 | ||||||
Comments | Average number of regenerated shoots per callus (NRS) was measured to evaluate regeneration ability and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 29,380,621-30,445,683 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 4 | 97.7-102.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDO004 | 4 | 97.7 | 102.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1100 | RFLP | Oryza sativa | qtl_marker |
To | S13536 | RFLP | Oryza sativa | qtl_marker |
To | C62306S | RFLP | Oryza sativa | qtl_marker |
To | R2785 | RFLP | Oryza sativa | qtl_marker |
To | S2486 | RFLP | Oryza sativa | qtl_marker |
To | S20653S | RFLP | Oryza sativa | qtl_marker |
To | G102 | RFLP | Oryza sativa | qtl_marker |
To | R514 | RFLP | Oryza sativa | qtl_marker |
To | C79 | RFLP | Oryza sativa | qtl_marker |
To | G3015 | RFLP | Oryza sativa | qtl_marker |
To | S12119 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000243) | Taguchi-Shiobara-F et al., 1997 (IAGP) |
Plant Structure | (PO:0000009) | Taguchi-Shiobara-F et al., 1997 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0009012) | Taguchi-Shiobara-F et al., 1997 (SM) |
(PO:0007033) | Taguchi-Shiobara-F et al., 1997 (SM) | |
Growth Stage | (GRO:0007001) | Taguchi-Shiobara-F et al., 1997 (SM) |
Environment | (EO:0007266) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Taguchi-Shiobara-F et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 29,380,621 | 30,445,683 | ~160K SNPs x 20 accessions (McNally 2... | 520 | Search for SNPs |
chr4 | 29,380,621 | 30,445,683 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr4 | 29,380,621 | 30,445,683 | Huang X, et al, Nat Genetics 2010 Nov... | 2,430 | Search for SNPs |
chr4 | 29,380,621 | 30,445,683 | RiceDiversity 44K SNP assay, 34 trait... | 2,430 | Search for SNPs |
chr4 | 29,380,621 | 30,445,683 | RiceDiversity 44K SNP assay, 34 trait... | 131 | Search for SNPs |