QTL Accession ID | AQDD004 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | KCN |
Trait Name | potassium content |
Published Symbol | POT2 |
Trait Synonym(s) | |
Trait Category | Quality |
Chromosome | 7 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 24,622,352-24,623,729 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 7 | 135.9-139.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDD004 | 7 | 135.9 | 139.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ395 | RFLP | Oryza sativa | qtl_marker |
To | RG156 | RFLP | Oryza sativa | qtl_marker |
To | RM234 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM18 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000609) | Kang-H-J et al., 1998 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Kang-H-J et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 24,622,352 | 24,623,729 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr7 | 24,622,352 | 24,623,729 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 24,622,352 | 24,623,729 | Huang X, et al, Nat Genetics 2010 Nov... | 6 | Search for SNPs |
chr7 | 24,622,352 | 24,623,729 | RiceDiversity 44K SNP assay, 34 trait... | 6 | Search for SNPs |
chr7 | 24,622,352 | 24,623,729 | RiceDiversity 44K SNP assay, 34 trait... | 0 |