QTL Accession ID | AQCT009 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | BLRS | ||||||
Trait Name | blast disease resistance | ||||||
Published Symbol | Pi-32(t) | ||||||
Trait Synonym(s) |
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Trait Category | Biotic stress | ||||||
Chromosome | 12 | ||||||
Comments | This locus conferring resistance to blast isolate, BR26, was mapped at chromosomal locations where several resistance genes to blast, Pi-12(t), Pi-tq6, and Pi-21(t), had been reported previously. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 11,914,618-18,867,702 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CIRAD IR64/Azu DH QTL 2003 | BNL6.32 | 12 | 47.5-47.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCT009 | 12 | 47.5 | 47.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CSU70 | RFLP | Zea mays subsp. mays | qtl_marker |
To | R887 | RFLP | Oryza sativa | qtl_marker |
To | G2140 | RFLP | Oryza sativa | qtl_marker |
To | Y6854R | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000074) | Sallaud-C et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Sallaud-C et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Sallaud-C et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Sallaud-C et al., 2003 (SM) |
Environment | (EO:0007218) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Sallaud-C et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 11,914,618 | 18,867,702 | ~160K SNPs x 20 accessions (McNally 2... | 1,843 | Search for SNPs |
chr12 | 11,914,618 | 18,867,702 | '1536 chip' - 1311 SNPs x 395 rice ac... | 24 | Search for SNPs |
chr12 | 11,914,618 | 18,867,702 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 11,914,618 | 18,867,702 | Huang X, et al, Nat Genetics 2010 Nov... | 17,082 | Search for SNPs |
chr12 | 11,914,618 | 18,867,702 | RiceDiversity 44K SNP assay, 34 trait... | 17,082 | Search for SNPs |
chr12 | 11,914,618 | 18,867,702 | RiceDiversity 44K SNP assay, 34 trait... | 492 | Search for SNPs |