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Oryza sativa QTL "AQBT005" (bacterial blight disease resistance)
| QTL Accession ID | AQBT005 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | BBRS | ||||
| Trait Name | bacterial blight disease resistance | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Biotic stress | ||||
| Chromosome | 3 | ||||
| Comments | Lesion length caused by infection with Xoo stain, CR4, was measured to evaluate resistance to bacterial blight disease and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 23,088,332-23,088,721 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 174-178.7 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBT005 | 3 | 174 | 178.7 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ403 | RFLP | Oryza sativa | qtl_marker |
| To | RG482 | RFLP | Oryza sativa | qtl_marker |
| To | RM16 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RZ474 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000175) | Li-Z-K et al., 1999 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007246) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-Z-K et al., 1999 (SM) |
Database Cross-References (1)
SNPs (3)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 23,088,332 | 23,088,721 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr3 | 23,088,332 | 23,088,721 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 23,088,332 | 23,088,721 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
| chr3 | 23,088,332 | 23,088,721 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
| chr3 | 23,088,332 | 23,088,721 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
