QTL Accession ID | AQBP005 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | ALKDIG | ||||
Trait Name | alkali digestion | ||||
Published Symbol | qASS-6 | ||||
Trait Synonym(s) |
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Trait Category | Quality | ||||
Chromosome | 6 | ||||
Comments | Alkali spreading score (ASS) was measured to evaluate rice grain quality and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 3,168,314-4,212,949 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 6 | 34.2-38.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBP005 | 6 | 34.2 | 38.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM225 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G165 | RFLP | Oryza sativa | qtl_marker |
To | RZ450 | RFLP | Oryza sativa | qtl_marker |
To | RM204 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G30 | RFLP | Oryza sativa | qtl_marker |
To | RM217 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000134) | He-P et al., 1999 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | He-P et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 3,168,314 | 4,212,949 | ~160K SNPs x 20 accessions (McNally 2... | 581 | Search for SNPs |
chr6 | 3,168,314 | 4,212,949 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr6 | 3,168,314 | 4,212,949 | Huang X, et al, Nat Genetics 2010 Nov... | 2,671 | Search for SNPs |
chr6 | 3,168,314 | 4,212,949 | RiceDiversity 44K SNP assay, 34 trait... | 2,671 | Search for SNPs |
chr6 | 3,168,314 | 4,212,949 | RiceDiversity 44K SNP assay, 34 trait... | 127 | Search for SNPs |