QTL Accession ID | AQBL021 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | KSN |
Trait Name | potassium sensitivity |
Published Symbol | |
Trait Synonym(s) | potassium deficiency |
Trait Category | Abiotic stress |
Chromosome | 8 |
Comments | Relative K use efficiency [K use efficiency under K-sufficient culture - K use efficiency under K-stress)/K use efficiency under K-sufficient culture] was measured and computed to evaluate rice tolerance to low-potassium stress and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 25,590,576-25,592,993 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 8 | 63-90.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBL021 | 8 | 63 | 90.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | S2AS3I4 | RFLP | Oryza sativa | qtl_marker |
To | RZ66 | RFLP | Oryza sativa | qtl_marker |
To | S1AS1I2 | RFLP | Oryza sativa | qtl_marker |
To | RG418 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000008) | Luo-A-C et al., 1998 (IAGP) |
Plant Structure | (PO:0000003) | Luo-A-C et al., 1998 (SM) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007134) | Luo-A-C et al., 1998 (SM) |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Luo-A-C et al., 1998 (SM) |
(GRO:0007001) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007293) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Luo-A-C et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 25,590,576 | 25,592,993 | ~160K SNPs x 20 accessions (McNally 2... | 3 | Search for SNPs |
chr8 | 25,590,576 | 25,592,993 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr8 | 25,590,576 | 25,592,993 | Huang X, et al, Nat Genetics 2010 Nov... | 8 | Search for SNPs |
chr8 | 25,590,576 | 25,592,993 | RiceDiversity 44K SNP assay, 34 trait... | 8 | Search for SNPs |
chr8 | 25,590,576 | 25,592,993 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |