QTL Accession ID | AQBL002 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | KSN |
Trait Name | potassium sensitivity |
Published Symbol | |
Trait Synonym(s) | potassium deficiency |
Trait Category | Abiotic stress |
Chromosome | 3 |
Comments | Relative plant height [(plant height under K-sufficient culture - plant height under K-stress)/plant height under K-sufficient culture] was measured and computed to evaluate rice tolerance to low-potassium stress and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 15,469,002-15,472,481 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 3 | 86.7-95.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBL002 | 3 | 86.7 | 95.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ284 | RFLP | Oryza sativa | qtl_marker |
To | RZ394 | RFLP | Oryza sativa | qtl_marker |
To | RZ574 | RFLP | Oryza sativa | qtl_marker |
To | r9 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000008) | Luo-A-C et al., 1998 (IAGP) |
Plant Structure | (PO:0000003) | Luo-A-C et al., 1998 (SM) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007134) | Luo-A-C et al., 1998 (SM) |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Luo-A-C et al., 1998 (SM) |
(GRO:0007001) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007293) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Luo-A-C et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 15,469,002 | 15,472,481 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
chr3 | 15,469,002 | 15,472,481 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 15,469,002 | 15,472,481 | Huang X, et al, Nat Genetics 2010 Nov... | 11 | Search for SNPs |
chr3 | 15,469,002 | 15,472,481 | RiceDiversity 44K SNP assay, 34 trait... | 11 | Search for SNPs |
chr3 | 15,469,002 | 15,472,481 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |